Explore projects
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Software package for mapping pixel coordinates to physical world coordinates for colony picking from agar plate.
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Code and other material for the "Writing napari plug-ins" introductory course.
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Code for the paper: Welling, Mohr, et al. "Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins".
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Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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Conrad, Runser, Gómez, Lang et al., The Biomechanical Basis of Biased Epithelial Tube Elongation in Lung and Kidney Development
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H. Gómez, M. Dumond, L. Hodel, R. Vetter, D. Iber, 3D Cell Neighbour Dynamics in Growing Pseudostratified Epithelia
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Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.
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IceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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MATLAB wrapper around the Java Bio-Formats library (https://www.openmicroscopy.org/bio-formats/).
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Level difference model of somite formation.
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A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.
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