Explore projects

Software package for mapping pixel coordinates to physical world coordinates for colony picking from agar plate.

Code and other material for the "Writing napari plug-ins" introductory course.

Code for the paper: Welling, Mohr, et al. "Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins".

DOI: https://doi.org/10.7554/eLife.44491

Collection of ImarisXT based projects.

Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.

Conrad, Runser, Gómez, Lang et al., The Biomechanical Basis of Biased Epithelial Tube Elongation in Lung and Kidney Development

H. Gómez, M. Dumond, L. Hodel, R. Vetter, D. Iber, 3D Cell Neighbour Dynamics in Growing Pseudostratified Epithelia

Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.

IceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).

MATLAB wrapper around the Java Bio-Formats library (https://www.openmicroscopy.org/bio-formats/).

Level difference model of somite formation.

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.