Explore projects

Rapid Viral Variant Exploration and Detection - Interactive WebApp

V-pipe is a pipeline designed for analysing NGS data of short viral genomes https://cbg-ethz.github.io/V-pipe/

Wrangling short-read sequencing data for import into SILO

WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

Software package for mapping pixel coordinates to physical world coordinates for colony picking from agar plate.

Code and other material for the "Writing napari plug-ins" introductory course.

Code for the paper: Welling, Mohr, et al. "Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins".

DOI: https://doi.org/10.7554/eLife.44491

Collection of ImarisXT based projects.

Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.

Conrad, Runser, Gómez, Lang et al., The Biomechanical Basis of Biased Epithelial Tube Elongation in Lung and Kidney Development

H. Gómez, M. Dumond, L. Hodel, R. Vetter, D. Iber, 3D Cell Neighbour Dynamics in Growing Pseudostratified Epithelia