Explore projects

This repo aims to demonstrate image analysis with CellX GUI, cellx batch processing using snakemake and cell tracking with tracx. It includes demo data and demo scripts to showcase the functionalities. For the CellX GUI please start the Desktop environment.

CellX is a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images.

Run EFM enumeration on a SBML model using efmtool.

V-pipe is a pipeline designed for analysing NGS data of short viral genomes https://cbg-ethz.github.io/V-pipe/