Explore projects
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Track spike sorted units across multiple recording sessions.
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Neuron models with example notebooks and scripts to generate the figures in the manuscript: "Tracking axon initial segment plasticity using high-density microelectrode arrays: A computational study"
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Code for publication 'Robustness and innovation in synthetic genotype networks' https://www.nature.com/articles/s41467-023-38033-3
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Wrapper around StarDist to make it easier to use for end-users.
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Supplementary code for the paper: Aizhan Tastanova et al. "A biomedical tattoo system for early detection of cancer-associated hypercalcemia".
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Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.
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Code and data for paper: Dempsey W. P., Hodas N. O., Ponti A. and Pantazis P. Determination of the source of SHG verniers in zebrafish skeletal muscle. Scientific Reports 5:18119. 2015.
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Qu is an attempt to make the full deep learning workflow more interactive by providing a user interface (implemented as napari widget) that abstracts all steps from ground truth generation and curation to training and prediction.
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