Explore projects
-
Updated
-
Track spike sorted units across multiple recording sessions.
Updated -
Neuron models with example notebooks and scripts to generate the figures in the manuscript: "Tracking axon initial segment plasticity using high-density microelectrode arrays: A computational study"
Updated -
Updated
-
Updated
-
Wrapper around StarDist to make it easier to use for end-users.
Updated -
Qu is an attempt to make the full deep learning workflow more interactive by providing a user interface (implemented as napari widget) that abstracts all steps from ground truth generation and curation to training and prediction.
Updated -
-
-
Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.
Updated -
Code for the paper: Welling, Mohr, et al. "Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins".
Updated -
pIceImarisConnector is a simple python class that eases communication between Bitplane Imaris (http://www.bitplane.com) and python (http://www.python.org) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
Updated -
Code and other material for the "Writing napari plug-ins" introductory course.
Updated -
Updated
-
Software tools for cell tracking and lineage reconstruction in 2D microbial cell cultures
Updated -
Code repository for the Practical Course "Methods in Cell Analysis and Laboratory Automation" (Biotechnology Master Students).
Updated -
Updated
-
Updated