Explore projects
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Code for publication 'Robustness and innovation in synthetic genotype networks' https://www.nature.com/articles/s41467-023-38033-3
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Supplementary code for the paper: Aizhan Tastanova et al. "A biomedical tattoo system for early detection of cancer-associated hypercalcemia".
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Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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Code and data for paper: Dempsey W. P., Hodas N. O., Ponti A. and Pantazis P. Determination of the source of SHG verniers in zebrafish skeletal muscle. Scientific Reports 5:18119. 2015.
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Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.
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Collection of third-party tools and libraries for MATLAB.
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MATLAB wrapper around the Java Bio-Formats library (https://www.openmicroscopy.org/bio-formats/).
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Software tools for cell tracking and lineage reconstruction in 2D microbial cell cultures
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IceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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CellX is a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images.
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