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csb / odeSD
OtherA Specialized ODE Integrator for the Efficient Computation of Parameter Sensitivities
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csb / CellXGui
BSD 3-Clause "New" or "Revised" LicenseThis is the GUI for CellX, a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images.
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csb / CellX
BSD 3-Clause "New" or "Revised" LicenseCellX is a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images.
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csb / roboliq
GNU General Public License v3.0 or laterRoboliq - software for controlling liquid handling robots
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Lukas Widmer / RDMEcpp
Mozilla Public License 2.0Updated -
Software tools for cell tracking and lineage reconstruction in 2D microbial cell cultures
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Code and data for paper: Dempsey W. P., Hodas N. O., Ponti A. and Pantazis P. Determination of the source of SHG verniers in zebrafish skeletal muscle. Scientific Reports 5:18119. 2015.
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hima_public / HDsort
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Supplementary code for the paper: Aizhan Tastanova et al. "A biomedical tattoo system for early detection of cancer-associated hypercalcemia".
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Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.
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dlekshmi / SingleCell-GlobalTwoStage
MIT LicenseApplication of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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csb / SingleCell-GlobalTwoStage
MIT LicenseApplication of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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Aaron Ponti / IceImarisConnector
GNU General Public License v2.0 or laterIceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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Aaron Ponti / pIceImarisConnector
GNU General Public License v2.0 or laterpIceImarisConnector is a simple python class that eases communication between Bitplane Imaris (http://www.bitplane.com) and python (http://www.python.org) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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MATLAB wrapper around the Java Bio-Formats library (https://www.openmicroscopy.org/bio-formats/).
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Collection of third-party tools and libraries for MATLAB.
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Zhang et al. Notch2 signaling regulates Id4 and cell cycle genes to maintain neural stem cell quiescence in the adult hippocampus.
Collaboration with Taylor Lab
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