Explore projects
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Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.
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Single Cell Unit public / primed_track
MIT LicenseCode for the paper: Welling, Mohr, et al. "Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins".
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Aaron Ponti / pIceImarisConnector
GNU General Public License v2.0 or laterpIceImarisConnector is a simple python class that eases communication between Bitplane Imaris (http://www.bitplane.com) and python (http://www.python.org) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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csb / odeSD
OtherA Specialized ODE Integrator for the Efficient Computation of Parameter Sensitivities
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Single Cell Unit public / napari-object-analyzer
Apache License 2.0Code and other material for the "Writing napari plug-ins" introductory course.
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Collection of third-party tools and libraries for MATLAB.
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cbg / Viruses / LolliPop
GNU General Public License v3.0 or laterUpdated -
MATLAB wrapper around the Java Bio-Formats library (https://www.openmicroscopy.org/bio-formats/).
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Software tools for cell tracking and lineage reconstruction in 2D microbial cell cultures
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Aaron Ponti / IceImarisConnector
GNU General Public License v2.0 or laterIceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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Code repository for the Practical Course "Methods in Cell Analysis and Laboratory Automation" (Biotechnology Master Students).
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hima_public / HDsort
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Alessio Buccino / HDsort
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Peter Ruppen / device controller for AMEP
GNU General Public License v3.0 onlyPython library to control equipment needed for automated microfluidic electroporation. devices:
Fluigent pressure pump (e.g. FlowEZ) GW Instek AFG-2225 arbitrary function generatorUpdated