Explore projects

Collection of ImarisXT based projects.

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.

Level difference model of somite formation.

Code for internal projects with BSSE users.

Kokic et al. Minimisation of surface energy drives apical epithelial organisation and gives rise to Lewis’ law

Vetter, Kokic et al. Aboav-Weaire’s law in epithelia results from an angle constraint in contiguous polygonal lattices

A Specialized ODE Integrator for the Efficient Computation of Parameter Sensitivities

Code for the paper: Welling, Mohr, et al. "Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins".

DOI: https://doi.org/10.7554/eLife.44491

Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.

Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.

Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.

MATLAB wrapper around the Java Bio-Formats library (https://www.openmicroscopy.org/bio-formats/).

IceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).