Explore projects

Qu is an attempt to make the full deep learning workflow more interactive by providing a user interface (implemented as napari widget) that abstracts all steps from ground truth generation and curation to training and prediction.

SpikeInterface extractors for BEL chips

H. Gómez, M. Dumond, L. Hodel, R. Vetter, D. Iber, 3D Cell Neighbour Dynamics in Growing Pseudostratified Epithelia

Code and other material for the "Writing napari plug-ins" introductory course.

Collection of template scripts to perform spike sorting at BEL

Software package for mapping pixel coordinates to physical world coordinates for colony picking from agar plate.

Graph-based algorithm to compute propagation velocity in Python

Track spike sorted units across multiple recording sessions.

Conrad, Runser, Gómez, Lang et al., The Biomechanical Basis of Biased Epithelial Tube Elongation in Lung and Kidney Development

Python package to register Mea1k, Dualmode, and NeuroCMOS chips to microscope stages

Collection of ImarisXT based projects.

CellX is a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images.

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.