Explore projects
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Code repository for the Practical Course "Methods in Cell Analysis and Laboratory Automation" (Biotechnology Master Students).
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Python library to control equipment needed for automated microfluidic electroporation. devices:
Fluigent pressure pump (e.g. FlowEZ) GW Instek AFG-2225 arbitrary function generatorUpdated -
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Python library for communication with GW Instek AFG-2225 function generator.
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A small example demonstrating how tricky it is to solve for the capacity constraints
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Wrapper around StarDist to make it easier to use for end-users.
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Software tools for cell tracking and lineage reconstruction in 2D microbial cell cultures
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pIceImarisConnector is a simple python class that eases communication between Bitplane Imaris (http://www.bitplane.com) and python (http://www.python.org) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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Neuron models with example notebooks and scripts to generate the figures in the manuscript: "Tracking axon initial segment plasticity using high-density microelectrode arrays: A computational study"
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