Explore projects
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Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.
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Code for the paper: Welling, Mohr, et al. "Primed Track, high-fidelity lineage tracing in mouse pre-implantation embryos using primed conversion of photoconvertible proteins".
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Level difference model of somite formation.
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Python package to register Mea1k, Dualmode, and NeuroCMOS chips to microscope stages
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Track spike sorted units across multiple recording sessions.
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Graph-based algorithm to compute propagation velocity in Python
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Software package for mapping pixel coordinates to physical world coordinates for colony picking from agar plate.
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Collection of template scripts to perform spike sorting at BEL
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Code and other material for the "Writing napari plug-ins" introductory course.
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Qu is an attempt to make the full deep learning workflow more interactive by providing a user interface (implemented as napari widget) that abstracts all steps from ground truth generation and curation to training and prediction.
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