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MATLAB implementation of the parameter space exploration method described in: Zamora-Sillero, E. et al., 2011. Efficient characterization of high-dimensional parameter spaces for systems biology. BMC Systems Biology, 5, p.142.
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A Specialized ODE Integrator for the Efficient Computation of Parameter Sensitivities
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Topological filtering method: model space exploration for ODE models based on approximate parameter space exploration. Initially described in: Sunnåker, M. et al., 2013, Sci Signal, 6(277), p.ra41.
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This is the GUI for CellX, a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images.
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CellX is a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images.
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Software tools for cell tracking and lineage reconstruction in 2D microbial cell cultures
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Code and data for paper: Dempsey W. P., Hodas N. O., Ponti A. and Pantazis P. Determination of the source of SHG verniers in zebrafish skeletal muscle. Scientific Reports 5:18119. 2015.
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Supplementary code for the paper: Aizhan Tastanova et al. "A biomedical tattoo system for early detection of cancer-associated hypercalcemia".
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Software for embryo alignment, segmentation and lineage tracing using dual fluorescent labels with primed conversion.
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Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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Application of global two stage methodology to single cell data to infer kinetic Non-linear mixed effect models of signalling.
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IceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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pIceImarisConnector is a simple python class that eases communication between Bitplane Imaris (http://www.bitplane.com) and python (http://www.python.org) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
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MATLAB wrapper around the Java Bio-Formats library (https://www.openmicroscopy.org/bio-formats/).
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