- supports scanning a TSV file for V-pipe samples
 - saving raw output to JSON/YAM
 - printing colourized output on the console
 - creating a table for the publication

 - https://github.com/cbg-ethz/pangolin/blob/d18f99415bd70266e1e67edf512b1fd293cb404e/cooc-mutbamscan
 - https://github.com/cbg-ethz/pangolin/blob/d18f99415bd70266e1e67edf512b1fd293cb404e/cooc-colourmut
 - https://github.com/cbg-ethz/pangolin/blob/d18f99415bd70266e1e67edf512b1fd293cb404e/cooc-pubmut