2.99.2 - Reports and uploads New features: - Mass-importer tools to assist building samples/ directory structure from .fastq.gz files. (see: utils/README.md) - Dehuman: V-pipe can now generate compressed .cram files from the raw reads that have been depleted from host (human) reads to assist upload to public databases such as, e.g, SRA. (see config manual, sections "output" and "dehuman") - Diversity: Computation of various diversity indices for the underlying samples following the review: https://doi.org/10.1016/j.coviro.2021.06.002 (see config manual, sections "output" and "diversity") Bugfixes: - frameshift_deletions_checks: English language reports now correctly covers insertions. Preview features: - a series of tools and features that can be customized to assist in uploading results and raw reads to public databases such as ENA. (see config manual, sections "output" and "upload", see: scripts/prepare_upload_symlinks.sh)