Standardized workflow - directory structure follows snakemake workflow catalog's standardized usage more closely - configuration manual generated automatically from JSON schema see: config/config.html For legacy V-pipe 1.x/2.x users: - the new directory structure requires adapting old INI files please refer to config/README.md section legacy-v-pipe-1xx2xx-users NOTE: - currently only the analysis of NGS viral data is fully tested and guaranteed stable. - For other more advanced functionality (e.g., benchmarking) you might want to wait until a future release.