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Version 0.4.0

 - frameshift_deletions_checks: --chain as alternative to running mafft
 - packaging modernized

Version 0.3.6

updates in frameshift_deletions_checks

 - better english messages generation
 - use actual fractions instead of %

Version 0.3.4:

 - generic frameshift_deletions_checks that uses alignments
 - fix in minority_variants

Release 0.3.3 - frameshift_deletions_checks

New feature:
frameshift insertions and deletions are reported

this is done through pairwise alignment of consensus and reference
(also works for consensus where deletions are _not_ marked with `-`)

Package version 0.3.2

Fixes:
 - `-`s correctly reported instead of `N`s consensus sequences

News (experimental scripts):
 - aln2basecnt:	extract base counts and coverage information from a single alignment file
 - gather_coverage:	gather multiple per sample coverage information into a single unified cohort's file

These new scripts are segmented-viruses aware.

Bump to version 0.3.1