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v0.4.0
v0.4.0 - more general Feature: - configurable filters to remove problematic mutations from the table - supports runing LolliPop on other generic type of timeseries, not necessarily single point mutations Bugfix: - ruamel >= 0.15
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v0.3.0
Version 0.3.0 - Converted to a proper python package with poetry and click - Command format has changed and uses subcommands - Integrated into V-pipe - Outputs JSON for dashboard uploads - Tools for generating input to deconvolution (tallymut) - nodate mode (for benchmarks w/o timeline) - Presets and examples - Automatic test (does first/fastest curve from preprint) - Partial support for aarch64 - Optionnal BCBio still missing on bioconda Bugfixes: - half-height curves if a variant in the var_date interval and one not being considered are very close to each other, there is a risk that bootstraping will attribute only half to the variant and half to "undetermined" Publication: - Notebook graphs can now be replicated from command line
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